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Table 2 The splicing patterns of CPEB3, the corresponding CPEB3 primer pairs, and the associated transcripts.

From: Characterization of the transcripts and protein isoforms for cytoplasmic polyadenylation element binding protein-3 (CPEB3) in the mouse retina

Amplicon

Primer Pair

Corresponding Transcripts

CPEB3

f-r

 

flanking 69 nt and 24 nt

4-5

 

Flanking exon 11

1-7

 

+69+24

17-18

transcripts 1a-1d

+69-24

17-20

transcript 2

-69+24

19-18

transcripts 3, 5, 6

-69-24

19-20

transcript 4

exon 11 extension

3-8

transcript 5

exon 11 + exon 12

21-13

transcripts 1a-1d, 3, 4, 6

exon 11 deletion

16-34

a novel transcript, transcript

partial exon skipping within exon 4

39-40

transcript 6