Primer name | Primer sequence | Target gene or sequence | Product size (bp) | source (references) |
---|---|---|---|---|
ffh-F2 a | 5' GGTAGGTCTTCAAGGTGTTGGTAAA 3' | Ffh | 121 | this work |
ffh-R2 | 5' AGTTTGAGCTGCAGGACGATATAA 3' | |||
recA-F1 a,b | 5' TTGAAAAAGCGTTTGGTCGTG 3' | recA | 121 | this work |
recA-R1 | 5' GGGAAACCACCAATACCCAAT 3' | |||
rpoD-F1 a,b | 5' CAGAGGGTTGCAATTTCTTGATT 3' | rpoD | 121 | this work |
rpoD-R1 | 5' TCTGACCCACCATGTTGCAT 3' | |||
16S-F1a b | 5' AGCGCAACCCTCATCCTTAG 3' | rRNA 16S | 121 | this work |
16S-R1 | 5' AGCCCACCCTATAAGGGCC 3' | |||
map1gardF a,b | 5' CACTTGAAGGAATGCCAGTTTCTC 3' | map1 | 85 | this work |
map1gardR | 5' CTTAGGATTTGTAGCATTGATTACTGACACT 3' | |||
AB128 | 5' ACTAGTAGAAATTGCACAATCTAT 3' | pCS20 | 278 | Martinez et al., 2004 |
AB129 | 5' TGATAACTTGGTGCGGGAAATCCTT 3' | |||
NKpn1-pdN9 | 5' GTGGTACCGCTCTCCGTCCGANNNNNNNNN 3' | Kpn I | / | Daigle et al., 2001 |
NKpn1 | 5' GTGGTACGGCTCTCCGTCCGA 3' | NKpn I tag | 200-400 | |
ARN16SGarF | 5' AACTTGAGAGTTTGATCCTGGCT 3' | rRNA 16S | 1503 | this work |
ARN16SGarR | 5' AGGAGGTAATCCAGCCGCAGGTT 3' | this work | ||
ARN5SGarR | 5' TCTCCCGTGCCTTAAGACAAA 3' | rRNA 23S | 2935 | this work |
ARN23SGarF | 5' TTGATGGATGCCTTGGCGTTAA 3' | rRNA 5S | this work |