Location | Primer | F/R | species | 5'base | 3'base | 5'- to -3' |
---|---|---|---|---|---|---|
TSSI | 0 | F | Hs | -6131 | -6115 | CCCGCAGAGCCTAAAGTGAG |
TSSII | 1 | F | Hs | -1454 | -1435 | GGGAGTGGGATCTCTCCTTG |
TSSII | 2 | F | Hs | -1308 | -1289 | TCTCCTCCATTCTGGGTCCT |
TSSII | 3 | R | Hs | -1250 | -1268 | GGCTAGGGTCTGAATGCTCA |
TSSII | 4 | R | Hs | -1201 | -1220 | GAGCCCAGCCTGAGTTGCTG |
TSSII | 5 | F | Hs | -1135 | -1115 | CAGTCAGTCGTGGTCCCAAGG |
TSSII | 6 | F | Hs | -1104 | -1086 | GCAGGTTTTTGGGTGAGTG |
TSSII | 7 | F | Hs | -1038 | -1018 | GGCAGAGTCGACGGGAACAGT |
TSSII | 8 | R | Hs | -1031 | -1049 | ACTGTTCCCGTCGACTCTGCC |
intron | 9 | R | Hs | -913 | -933 | GTGGCTCTGGCCTCAGATGAT |
intron | 10 | R | Hs | -842 | -824 | GCTAGGTGTCTGCTGCTCC |
intron | 11 | R | Hs | -514 | -534 | AGCACAGAGAGTGGGCCTAAG |
intron | 12 | F | Hs | -185 | -164 | CAGTGCCCTGTTACCGGGTCTC |
TSSII&III | 13 | R | Hs | -119 | -138 | CCAGTCAGCCACTCTCGCGA |
TSSII&III | 14 | R | Hs | -115 | -134 | ACAGCCAGTCAGCCACTCTC |
cds | 15 | F | Hs | 780 | 799 | CTACAAGGTGTGGGCCAAGT |
cds | 16 | R | Hs | 952 | 933 | CTTCCTCACCCTGCAGTAGC |
TSSII | Mn1 | F | Mm | -1061 | -1042 | GCAGGTTTTTGGGTGAATGT |
TSSII | Mn2 | F | Mm | -1003 | -984 | AGCCTACGGGAATAGGCACT |
TSSII | Mn3 | R | Mm | -981 | -1000 | CGCAGTGCCTATTCCCGTAG |