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Table 1 Primers used in this study

From: Efficient isolation of specific genomic regions retaining molecular interactions by the iChIP system using recombinant exogenous DNA-binding proteins

Number

Name

Sequence (5′ → 3′)

Experiments

26572

LexA-N2

ttctctatcgataggtacctcg

Real-time PCR in Figures 3, 4 and Additional file 1: Figure S1 (LexA BE)

27428

LexA-C-for-Pax5

cgctgcgtggtcgagcgtactg

Real-time PCR in Figures 3, 4 and Additional file 1: Figure S1 (LexA BE)

27134

cPax5-ChIP-UP(−0.2 k)-F

gggctcttatttcgtttttcttgtt

Real-time PCR in Figures 3 and 4 (−0.7 k)

27135

cPax5-ChIP-UP(−0.2 k)-R

gtgcttatttgtcagcgtggttg

Real-time PCR in Figures 3 and 4 (−0.7 k)

27013

cPax5-ChIP-UP(−10 k)-F

tccacatcgttacattgtcacttct

Real-time PCR in Figures 3, 4 and Additional file 1: Figure S1 (−10 k)

27014

cPax5-ChIP-UP(−10 k)-R

taaaagccctcagttcgatttattg

Real-time PCR in Figures 3, 4 and Additional file 1: Figure S1 (−10 k)

26552

cPax5-inExon1A-F

cctaaaacgtttagtttcagctcagt

RT-PCR in Figure 5 and Additional file 1: Figure S2 (cPax5 Ex1A)

26553

cPax5-inExon1A-R

ttcgtggctctctcaggtca

RT-PCR in Figure 5 and Additional file 1: Figure S2 (cPax5 Ex1A)

27571

cAID-Ex3-F

catgtggaggttctcttcctacg

RT-PCR in Figure 5 and Additional file 1: Figure S2 (cAID Ex3)

27572

cAID-Ex3-R

caagtttgggtaggcacgaag

RT-PCR in Figure 5 and Additional file 1: Figure S2 (cAID Ex3)

26773

18SrRNA-F2

cttagagggacaagtggcg

RT-PCR in Additional file 1: Figure S2 (18S)

26774

18SrRNA-R2

acgctgagccagtcagtgta

RT-PCR in Additional file 1: Figure S2 (18S)

27420

hHS5-TAL-Target-F

ccagtttctccagtttccctttt

Real-time PCR in Additional file 1: Figure S5 (5′HS5)

27421

hHS5-TAL-Target-R

ttttcaaaatgcaaggtgatgtc

Real-time PCR in Additional file 1: Figure S5 (5′HS5)

27310

hIRF1-prom-F

cgcctgcgttcgggagatatac

Real-time PCR in Additional file 1: Figure S5 (IRF-1)

27312

hIRF1-prom-R1 + 2

ctgtcctctcactccgccttgt

Real-time PCR in Additional file 1: Figure S5 (IRF-1)