Skip to main content

Table 2 Repeat elements in the AF9 SAR and non-SAR regions predicted by CENSOR program

From: Matrix association region/scaffold attachment region (MAR/SAR) sequence: its vital role in mediating chromosome breakages in nasopharyngeal epithelial cells via oxidative stress-induced apoptosis

AF9 regions

Nucleotide position

Predicted repeat elements

From

To

Name

Class

SAR region

236,920

236,987

TWIFB1

DNA/hAT

237,423

237,476

MER20

DNA/hAT

237,491

237,548

hAT-80_HM

DNA/hAT

237,594

237,636

CR1-8_HM

NonLTR/CR1

237,637

237,719

L1ME4A

NonLTR/L1

238,883

238,925

GYPSY16-I_AG

LTR/Gypsy

239,516

239,716

MIR

NonLTR/SINE

239,786

239,871

ZAPHOD

DNA

 

241,267

241,318

Polinton-1_XT

DNA/Polinton

241,475

241,555

Hoyak1

DNA/hAT

241,769

241,847

L4

NonLTR/RTEX

242,176

242,276

ATCOPIA38_I

LTR/Copia

242,849

242,893

BGLII_LTR

ERV/ERV2

242,989

243,024

L1-1_ET

NonLTR/L1

243,397

243,483

ERV1-4-EC_I

ERV/ERV1

244,480

244,530

hATw-2_SP

DNA/hAT

244,901

245,043

CHARLIE7

DNA/hAT

245,627

245,728

ERE2_EH

Interspersed_Repeat

Non-SAR region

71,936

71,999

BEL1_MH-I

LTR/BEL

72,081

72,368

AluJr4

NonLTR/SINE/SINE1

72,447

72,695

AluJ

Interspersed_Repeat

73,459

73,707

MIR

NonLTR/SINE

73,708

73,761

TE-X-4_DR

Interspersed_Repeat

74,030

74,304

AluJb

NonLTR/SINE/SINE1

74,895

74,998

CHARLIE5

DNA/hAT

75,006

75,169

CHARLIE5

DNA/hAT

75,192

75,466

AluJr

NonLTR/SINE/SINE1

  1. The AF9 SAR region is located at coordinates 236,059 to 246,292 [Ensembl:ENSG00000171843]. The nucleotide position, name and class of the predicted repeat elements are shown. The region amplified by the reverse primer (AF9 236,211 R) is from coordinates 236,059 to 236,211 while the region amplified by the forward primer (AF9 245,507 F) is from coordinates 245,507 to 246,292. The amplified SAR region contains one repeat element, namely ERE2_EH (at coordinates 245,627–245,728). The AF9 non-SAR region is located at coordinates 71,116 to 75,277 [Ensembl:ENSG00000171843]. The nucleotide position, name and class of the predicted repeat elements are shown. The region amplified by the reverse primer (AF9 71,282 R) is from coordinates 71,116 to 71,282 while the region amplified by the forward primer (AF9 74,494 F) is from coordinates 74,494 to 75,277. The amplified non-SAR region contains three repeat elements, namely two CHARLIE5 (at coordinates 74,895–74,998 and 75,006–75,169) and one AluJr (at coordinates 75,192–75,466)